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    TCP-1/cpn60 chaperonin family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843101, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TCP-1/cpn60 chaperonin family protein
    Primary source
    TAIR:AT1G67760
    Locus tag
    AT1G67760
    See related
    Araport:AT1G67760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12A21.11; F12A21_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (25405316..25406418, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene photosystem II BY Neighboring gene Pectate lyase family protein Neighboring gene terminal EAR1-like 2 Neighboring gene CLAVATA3/ESR-RELATED 8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_105444.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent protein folding chaperone IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TCP-1/cpn60 chaperonin family protein
    NP_176942.2
    • TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT1G24510.1); Has 1127 Blast hits to 982 proteins in 329 species: Archae - 446; Bacteria - 0; Metazoa - 192; Fungi - 185; Plants - 115; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25405316..25406418 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105444.3 → NP_176942.2  TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176942.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ENH2, Q67ZE4
      Conserved Domains (1) summary
      cl02777
      Location:2 → 55
      chaperonin_like; chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I ...
    Nucleotide Protein
    Heading Accession and Version

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