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    GCP1 glycoprotease 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819135, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GCP1
    Official Full Name
    glycoprotease 1
    Primary source
    TAIR:AT2G45270
    Locus tag
    AT2G45270
    See related
    Araport:AT2G45270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F4L23.22; glycoprotease 1
    Summary
    Mitochondrial protein essential for embryo development.
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    Genomic context

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    See GCP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (18666409..18669873)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene integral membrane hemolysin-III-like protein Neighboring gene miscRNA Neighboring gene myosin-4 protein (DUF641) Neighboring gene RAS associated with diabetes protein 51C Neighboring gene Transketolase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Eukaryotic GCP1 is a conserved mitochondrial protein required for progression of embryo development beyond the globular stage in Arabidopsis thaliana. Haussuehl K, et al. Biochem J, 2009 Oct 12. PMID 19694617
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_130090.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N(6)-L-threonylcarbamoyladenine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrial inner membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycoprotease 1
    NP_566039.1
    • glycoprotease 1 (GCP1); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis, embryo development; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, O-sialoglycoprotein peptidase (InterPro:IPR022450), Peptidase M22, glycoprotease (InterPro:IPR000905), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT4G22720.2); Has 11122 Blast hits to 11085 proteins in 2922 species: Archae - 268; Bacteria - 6121; Metazoa - 269; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 3957 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18666409..18669873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130090.5 → NP_566039.1  glycoprotease 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566039.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22145, Q8VWL2
      UniProtKB/TrEMBL
      A0A178W2D2, A0A5S9X776
      Conserved Domains (3) summary
      PRK09604
      Location:86 → 444
      PRK09604; UGMP family protein; Validated
      cl17037
      Location:330 → 396
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
      cl22532
      Location:86 → 192
      Carbam_trans_N; Carbamoyltransferase N-terminus
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22145.2

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