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    RPN13 regulatory particle non-ATPase 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817200, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RPN13
    Official Full Name
    regulatory particle non-ATPase 13
    Primary source
    TAIR:AT2G26590
    Locus tag
    AT2G26590
    See related
    Araport:AT2G26590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    regulatory particle non-ATPase 13; T9J22.26; T9J22_26
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    Genomic context

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    See RPN13 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (11310957..11315524, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene plant-specific transcription factor YABBY family protein Neighboring gene Glycosyl hydrolase superfamily protein Neighboring gene Transducin family protein / WD-40 repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cross-species divergence of the major recognition pathways of ubiquitylated substrates for ubiquitin/26S proteasome-mediated proteolysis. Fatimababy AS, et al. FEBS J, 2010 Feb. PMID 20059542
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036347.2
    NM_001036348.2
    NM_001336077.1
    NM_128216.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    regulatory particle non-ATPase 13
    NP_001031424.1
    • regulatory particle non-ATPase 13 (RPN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001031425.1
    • regulatory particle non-ATPase 13 (RPN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_565626.1
    • regulatory particle non-ATPase 13 (RPN13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell adhesion; LOCATED IN: integral to membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome complex ubiquitin receptor, subunit Rpn13 (InterPro:IPR006773); Has 502 Blast hits to 414 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 61; Plants - 54; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11310957..11315524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128216.3 → NP_565626.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565626.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48726, Q94JW3
      UniProtKB/TrEMBL
      A0A178VY31, A0A5S9X1N1, A0A7G2EBB2
      Conserved Domains (2) summary
      cd13314
      Location:15 → 118
      PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
      pfam16550
      Location:192 → 285
      RPN13_C; UCH-binding domain

    2. NM_001036348.2 → NP_001031425.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031425.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48726, Q94JW3
      UniProtKB/TrEMBL
      A0A178VY31, A0A5S9X1N1, A0A7G2EBB2
      Conserved Domains (2) summary
      cd13314
      Location:15 → 118
      PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
      pfam16550
      Location:192 → 285
      RPN13_C; UCH-binding domain

    3. NM_001036347.2 → NP_001031424.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031424.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O48726, Q94JW3
      UniProtKB/TrEMBL
      A0A178VY31, A0A5S9X1N1, A0A7G2EBB2
      Conserved Domains (2) summary
      cd13314
      Location:15 → 118
      PH_Rpn13; Pleckstrin homology-like domain of Regulatory Particle Non-ATPase 13
      pfam16550
      Location:192 → 285
      RPN13_C; UCH-binding domain

    4. NM_001336077.1 → NP_001325357.1  regulatory particle non-ATPase 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B2X5, A0A7G2EBB2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O48726.2

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