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    peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834448, updated on 18-Sep-2024

    Summary

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    Official Full Name
    peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53)
    Primary source
    TAIR:AT5G44250
    Locus tag
    AT5G44250
    See related
    Araport:AT5G44250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MLN1.18; MLN1_18
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (17823714..17825762, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene aminophospholipid ATPase 2 Neighboring gene pseudo Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In-depth proteome analysis of Arabidopsis leaf peroxisomes combined with in vivo subcellular targeting verification indicates novel metabolic and regulatory functions of peroxisomes. Reumann S, et al. Plant Physiol, 2009 May. PMID 19329564, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001085237.1
    NM_123792.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in peroxisome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53)
    NP_001078706.1
    • Protein of unknown function DUF829, transmembrane 53; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, transmembrane 53 (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF829, transmembrane 53 (TAIR:AT2G15695.1); Has 92 Blast hits to 92 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 70; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
    NP_199238.1
    • Protein of unknown function DUF829, transmembrane 53; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF829, transmembrane 53 (InterPro:IPR008547); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF829, transmembrane 53 (TAIR:AT2G15695.1); Has 221 Blast hits to 219 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 97; Fungi - 6; Plants - 101; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17823714..17825762 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123792.4 → NP_199238.1  peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199238.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G7V3, Q9FFG7
      Conserved Domains (1) summary
      pfam05705
      Location:129 → 379
      DUF829; Eukaryotic protein of unknown function (DUF829)

    2. NM_001085237.1 → NP_001078706.1  peptidase, S9A/B/C family, catalytic domain protein (Protein of unknown function DUF829, transmembrane 53) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078706.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQK0
      Conserved Domains (1) summary
      pfam05705
      Location:28 → 278
      DUF829; Eukaryotic protein of unknown function (DUF829)
    Nucleotide Protein
    Heading Accession and Version

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