U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    BBX8 B-box type zinc finger protein with CCT domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834878, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BBX8
    Official Full Name
    B-box type zinc finger protein with CCT domain-containing protein
    Primary source
    TAIR:AT5G48250
    Locus tag
    AT5G48250
    See related
    Araport:AT5G48250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    B-box domain protein 8; MIF21.14; MIF21_14
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BBX8 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (19561319..19563832, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene prolamin-like protein (DUF1278) Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene acetoacetyl-CoA thiolase 2 Neighboring gene Rrp15p protein Neighboring gene DUF868 family protein (DUF868) Neighboring gene uncharacterized protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Unequally redundant RCD1 and SRO1 mediate stress and developmental responses and interact with transcription factors. Jaspers P, et al. Plant J, 2009 Oct. PMID 19548978
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_124200.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    B-box type zinc finger protein with CCT domain-containing protein
    NP_199636.1
    • B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 9 (TAIR:AT3G07650.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19561319..19563832 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124200.3 → NP_199636.1  B-box type zinc finger protein with CCT domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199636.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUA9
      UniProtKB/TrEMBL
      A0A178UQF1, A0A5S9YCD2, A0A7G2FJ16
      Conserved Domains (2) summary
      cd19821
      Location:5 → 47
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:316 → 359
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUA9.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools