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    HVA22E HVA22 homologue E [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835144, updated on 18-Sep-2024

    Summary

    Official Symbol
    HVA22E
    Official Full Name
    HVA22 homologue E
    Primary source
    TAIR:AT5G50720
    Locus tag
    AT5G50720
    See related
    Araport:AT5G50720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E; ATHVA22E; HVA22 homologue E; MFB16.12; MFB16_12
    Summary
    Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.
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    Genomic context

    See HVA22E in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (20633193..20634618, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene reversibly glycosylated polypeptide 4

    General gene information

    NM_124450.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast  

    General protein information

    Preferred Names
    HVA22 homologue E
    NP_568744.1
    • HVA22 homologue E (HVA22E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue D (TAIR:AT4G24960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20633193..20634618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124450.5 → NP_568744.1  HVA22 homologue E [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568744.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FED2, Q9LUE9
      UniProtKB/TrEMBL
      A0A178UDD7, A0A384LCF8, B6VE45, Q0IGM2
      Conserved Domains (1) summary
      pfam03134
      Location:24 → 98
      TB2_DP1_HVA22; TB2/DP1, HVA22 family
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