U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    PMEPCRF pectin methylesterase PCR fragment F [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835418, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PMEPCRF
    Official Full Name
    pectin methylesterase PCR fragment F
    Primary source
    TAIR:AT5G53370
    Locus tag
    AT5G53370
    See related
    Araport:AT5G53370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATPMEPCRF; K19E1.17; K19E1_17; pectin methylesterase PCR fragment F; PECTIN METHYLESTERASE PCR FRAGMENT F
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PMEPCRF in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (21649532..21651713, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CLP protease regulatory subunit X Neighboring gene TRAF-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene O-acyltransferase (WSD1-like) family protein Neighboring gene O-acyltransferase (WSD1-like) family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Characterization of the pectin methylesterase-like gene AtPME3: a new member of a gene family comprising at least 12 genes in Arabidopsis thaliana. Micheli F, et al. Gene, 1998 Oct 5. PMID 9767082
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    NM_001345052.1
    NM_124716.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables enzyme inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables pectinesterase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    pectin methylesterase PCR fragment F
    NP_200149.1
    • pectin methylesterase PCR fragment F (PMEPCRF); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT3G49220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      21649532..21651713 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124716.3 → NP_200149.1  pectin methylesterase PCR fragment F [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200149.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FK05
      UniProtKB/TrEMBL
      A0A178UMF2, A0A5S9YDL0
      Conserved Domains (1) summary
      PLN02484
      Location:1 → 587
      PLN02484; probable pectinesterase/pectinesterase inhibitor

    2. NM_001345052.1 → NP_001332265.1  pectin methylesterase PCR fragment F [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGK2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK05.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools