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    OTP80 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836038, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OTP80
    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT5G59200
    Locus tag
    AT5G59200
    See related
    Araport:AT5G59200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MNC17.11; MNC17_11; ORGANELLE TRANSCRIPT PROCESSING 80
    Summary
    Encodes a chloroplast RNA editing factor.
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    Genomic context

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    See OTP80 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (23888793..23890431, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerase II Neighboring gene subtilase family protein Neighboring gene myosin heavy chain-like protein Neighboring gene PP2C protein (Clade A protein phosphatases type 2C)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing. Okuda K, et al. Plant J, 2014 Dec. PMID 25279799
    2. A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Hammani K, et al. Plant Cell, 2009 Nov. PMID 19934379, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CRR28, CRR21, OTP85 and OTP80 act as site-recognition factors for plastid RNA editing.
      Title: Quantitative analysis of motifs contributing to the interaction between PLS-subfamily members and their target RNA sequences in plastid RNA editing.
    Submit: New GeneRIF Correction

    General gene information

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    NM_125310.3

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in chloroplast RNA modification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within chloroplast RNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_200728.2
    • ORGANELLE TRANSCRIPT PROCESSING 80 (OTP80); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G37380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23888793..23890431 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125310.3 → NP_200728.2  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200728.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FIF7
      UniProtKB/TrEMBL
      A0A178U8R4, A0A654GCN4
      Conserved Domains (2) summary
      PLN03077
      Location:31 → 526
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:323 → 350
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FIF7.1

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