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    hypothetical protein (DUF167) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836463, updated on 18-Sep-2024

    Summary

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    Official Full Name
    hypothetical protein (DUF167)
    Primary source
    TAIR:AT5G63440
    Locus tag
    AT5G63440
    See related
    Araport:AT5G63440
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MLE2.7; MLE2_7
    Summary
    Encodes a protein that is conserved in eukaryotes. In vitro, it interacts with CACTIN.
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (25406252..25408456)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene RNA-metabolising metallo-beta-lactamase family protein Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 1 Neighboring gene SAP domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CACTIN is an essential nuclear protein in Arabidopsis and may be associated with the eukaryotic spliceosome. Baldwin KL, et al. FEBS Lett, 2013 Apr 2. PMID 23454656
    2. COP1 SUPPRESSOR 4 promotes seedling photomorphogenesis by repressing CCA1 and PIF4 expression in Arabidopsis. Zhao X, et al. Proc Natl Acad Sci U S A, 2018 Nov 6. PMID 30352855, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001085320.1
    NM_125739.4
    NM_180925.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within circadian regulation of translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of photomorphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    hypothetical protein (DUF167)
    NP_001078789.1
    • Protein of unknown function (DUF167); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF167) (TAIR:AT1G49170.1); Has 732 Blast hits to 732 proteins in 300 species: Archae - 13; Bacteria - 428; Metazoa - 192; Fungi - 6; Plants - 66; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
    NP_568972.2
    • Protein of unknown function (DUF167); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF167) (TAIR:AT1G49170.1); Has 813 Blast hits to 813 proteins in 317 species: Archae - 13; Bacteria - 428; Metazoa - 238; Fungi - 12; Plants - 68; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
    NP_851256.1
    • Protein of unknown function (DUF167); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); Has 297 Blast hits to 297 proteins in 98 species: Archae - 0; Bacteria - 8; Metazoa - 181; Fungi - 12; Plants - 60; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25406252..25408456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125739.4 → NP_568972.2  hypothetical protein (DUF167) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568972.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MRN7, Q8GWQ6, Q944I0, Q9FMV8
      UniProtKB/TrEMBL
      A0A178U7M9, A0A5S9YGL8, A0A7G2FII0
      Conserved Domains (1) summary
      pfam02594
      Location:144 → 215
      DUF167; Uncharacterized ACR, YggU family COG1872

    2. NM_180925.2 → NP_851256.1  hypothetical protein (DUF167) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851256.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GWQ6
      Conserved Domains (1) summary
      pfam02594
      Location:146 → 191
      DUF167; uncharacterized ACR, YggU family COG1872

    3. NM_001085320.1 → NP_001078789.1  hypothetical protein (DUF167) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078789.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FII0, A0A7G2FK97
      Conserved Domains (1) summary
      pfam02594
      Location:125 → 196
      DUF167; Uncharacterized ACR, YggU family COG1872
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWQ6.1

    Gene LinkOut

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