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    transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836622, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transcription factor
    Primary source
    TAIR:AT5G64980
    Locus tag
    AT5G64980
    See related
    Araport:AT5G64980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXK3.21; MXK3_21
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (25960732..25963258, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene cyclin dependent kinase group C2 Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene RAB GTPase homolog H1A Neighboring gene Nucleotide-sugar transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345660.1
    NM_125897.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor
    NP_201303.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      25960732..25963258 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125897.3 → NP_201303.1  transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201303.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQE2, A0A384KDK4, A0A5S9YHM2, A0A654GEA7, Q8GXM9, Q9LV80
      Conserved Domains (2) summary
      cd11393
      Location:226 → 275
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
      cl21463
      Location:4 → 36
      UBA_like_SF; UBA domain-like superfamily

    2. NM_001345660.1 → NP_001332139.1  transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQE2, A0A384KDK4, A0A5S9YHM2, A0A654GEA7, Q8GXM9, Q9LV80
      Conserved Domains (2) summary
      cd11393
      Location:226 → 275
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
      cl21463
      Location:4 → 36
      UBA_like_SF; UBA domain-like superfamily
    Nucleotide Protein
    Heading Accession and Version

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