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    chitin synthase, putative (DUF1218) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840059, updated on 18-Sep-2024

    Summary

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    Official Full Name
    chitin synthase, putative (DUF1218)
    Primary source
    TAIR:AT1G31720
    Locus tag
    AT1G31720
    See related
    Araport:AT1G31720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27M3.8; F27M3_8
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (11356076..11358095)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Copper amine oxidase family protein Neighboring gene Copper amine oxidase family protein Neighboring gene Adaptin family protein Neighboring gene beta-galactosidase 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis Domain of Unknown Function 1218 (DUF1218) Containing Proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) Function Redundantly to Alter Secondary Cell Wall Lignin Content. Mewalal R, et al. PLoS One, 2016. PMID 26930070, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Studies functionally characterized At1g31720 and At4g27435 (MODIFYING WALL LIGNIN-1/2 or MWL-1/2) for secondary cell wall lignin biosynthesis.
      Title: The Arabidopsis Domain of Unknown Function 1218 (DUF1218) Containing Proteins, MODIFYING WALL LIGNIN-1 and 2 (At1g31720/MWL-1 and At4g19370/MWL-2) Function Redundantly to Alter Secondary Cell Wall Lignin Content.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102907.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lignin metabolic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chitin synthase, putative (DUF1218)
    NP_174453.2
    • Protein of unknown function (DUF1218); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT4G19370.1); Has 139 Blast hits to 139 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 139; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11356076..11358095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332972.1 → NP_001321400.1  chitin synthase, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLD5

    2. NM_001332973.1 → NP_001321402.1  chitin synthase, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL47, A0A1P8AQT3

    3. NM_001332974.1 → NP_001321401.1  chitin synthase, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL47, A0A1P8AQV1

    4. NM_001332975.1 → NP_001321397.1  chitin synthase, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1P8AQR9, A2RVU1, Q9C6W2
      UniProtKB/TrEMBL
      A0A1P8AQT6

    5. NM_001332976.1 → NP_001321399.1  chitin synthase, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLD5, A0A1P8AQQ0

    6. NM_001332977.1 → NP_001321398.1  chitin synthase, putative (DUF1218) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL47, A0A1P8AQR1

    7. NM_102907.2 → NP_174453.2  chitin synthase, putative (DUF1218) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174453.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WL47
      Conserved Domains (1) summary
      pfam06749
      Location:77 → 167
      DUF1218; Protein of unknown function (DUF1218)
    Nucleotide Protein
    Heading Accession and Version

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