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    SWIB/MDM2 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840063, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SWIB/MDM2 domain superfamily protein
    Primary source
    TAIR:AT1G31760
    Locus tag
    AT1G31760
    See related
    Araport:AT1G31760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5M6.23
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (11372394..11374301, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene beta-galactosidase 15 Neighboring gene proline-rich family protein Neighboring gene miscRNA Neighboring gene ATP-binding cassette 14 Neighboring gene Defensin-like (DEFL) family protein Neighboring gene oligomeric golgi complex subunit Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Mitochondrial DNA-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination. Blomme J, et al. Plant Cell, 2017 May. PMID 28420746, Free PMC Article
    2. Phytohormones as Regulators of Mitochondrial Gene Expression in Arabidopsis thaliana. Bychkov IA, et al. Int J Mol Sci, 2023 Nov 29. PMID 38069246, Free PMC Article
    3. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_102910.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within mitochondrial DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within mitochondrial double-strand break repair via homologous recombination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to cytokinin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to gibberellin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with mitochondrial chromosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SWIB/MDM2 domain superfamily protein
    NP_564382.1
    • SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT2G35605.1); Has 990 Blast hits to 904 proteins in 230 species: Archae - 0; Bacteria - 216; Metazoa - 58; Fungi - 182; Plants - 383; Viruses - 6; Other Eukaryotes - 145 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11372394..11374301 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102910.4 → NP_564382.1  SWIB/MDM2 domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564382.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W7A8, A0A7G2DX88, Q9C504
      Conserved Domains (1) summary
      pfam02201
      Location:35 → 108
      SWIB; SWIB/MDM2 domain
    Nucleotide Protein
    Heading Accession and Version

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