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    CYP97A3 cytochrome P450, family 97, subfamily A, polypeptide 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840067, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CYP97A3
    Official Full Name
    cytochrome P450, family 97, subfamily A, polypeptide 3
    Primary source
    TAIR:AT1G31800
    Locus tag
    AT1G31800
    See related
    Araport:AT1G31800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''cytochrome P450; cytochrome P450; F5M6.19; F5M6_19; family 97; LUT5; LUTEIN DEFICIENT 5; polypeptide 3; polypeptide 3''; subfamily A
    Summary
    Encodes a protein with beta-ring carotenoid hydroxylase activity.
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    Genomic context

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    See CYP97A3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (11396402..11399714)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette 14 Neighboring gene Defensin-like (DEFL) family protein Neighboring gene oligomeric golgi complex subunit Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Formin Homology 14 Neighboring gene acyl-CoA-binding protein 6 Neighboring gene FRIGIDA like 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Defining the primary route for lutein synthesis in plants: the role of Arabidopsis carotenoid beta-ring hydroxylase CYP97A3. Kim J, et al. Proc Natl Acad Sci U S A, 2006 Feb 28. PMID 16492736, Free PMC Article
    2. Elucidation of the beta-carotene hydroxylation pathway in Arabidopsis thaliana. Fiore A, et al. FEBS Lett, 2006 Aug 21. PMID 16890225
    3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CYP97A3 encodes a beta-ring hydroxylase with major activity toward the beta-ring of alpha-carotene and to a lesser extent, the beta-rings of beta-carotene. [CYP97A3]
      Title: Defining the primary route for lutein synthesis in plants: the role of Arabidopsis carotenoid beta-ring hydroxylase CYP97A3.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_102914.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables carotene beta-ring hydroxylase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within carotenoid biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within xanthophyll biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 

    General protein information

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    Preferred Names
    cytochrome P450, family 97, subfamily A, polypeptide 3
    NP_564384.1
    • ''cytochrome P450, family 97, subfamily A, polypeptide 3'' (CYP97A3); FUNCTIONS IN: carotene beta-ring hydroxylase activity, oxygen binding; INVOLVED IN: carotenoid biosynthetic process, xanthophyll biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT3G53130.1); Has 33118 Blast hits to 32966 proteins in 1677 species: Archae - 61; Bacteria - 4341; Metazoa - 11636; Fungi - 7136; Plants - 8575; Viruses - 3; Other Eukaryotes - 1366 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11396402..11399714
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102914.3 → NP_564384.1  cytochrome P450, family 97, subfamily A, polypeptide 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564384.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93VK5, Q9C6S0
      UniProtKB/TrEMBL
      A0A178W7F4, A0A5S9WHE9, A0A7G2DX15
      Conserved Domains (1) summary
      PLN02738
      Location:1 → 595
      PLN02738; carotene beta-ring hydroxylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93VK5.1

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