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    Ribosomal protein L23/L15e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827375, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal protein L23/L15e family protein
    Primary source
    TAIR:AT4G16720
    Locus tag
    AT4G16720
    See related
    Araport:AT4G16720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4385C; FCAALL.416
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (9399865..9401408, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene methyl esterase 16 Neighboring gene uncharacterized protein Neighboring gene phosphatidylserine decarboxylase 1 Neighboring gene glycosyltransferase family protein 28 Neighboring gene terpene synthase 02 Neighboring gene terpene synthase 03

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Charge versus sequence for nuclear/nucleolar localization of plant ribosomal proteins. Savada RP, et al. Plant Mol Biol, 2013 Mar. PMID 23359052
    2. Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Chang IF, et al. Plant Physiol, 2005 Mar. PMID 15734919, Free PMC Article
    3. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981
    4. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
    5. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_117773.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L23/L15e family protein
    NP_193405.1
    • Ribosomal protein L23/L15e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L15e (InterPro:IPR000439), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L15e, conserved site (InterPro:IPR020925); BEST Arabidopsis thaliana protein match is: Ribosomal protein L23/L15e family protein (TAIR:AT4G17390.1); Has 1382 Blast hits to 1381 proteins in 431 species: Archae - 314; Bacteria - 0; Metazoa - 409; Fungi - 163; Plants - 282; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9399865..9401408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117773.4 → NP_193405.1  Ribosomal protein L23/L15e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193405.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23515
      UniProtKB/TrEMBL
      A0A178V5T1, A0A5S9XT35, A0A7G2F097
      Conserved Domains (1) summary
      PTZ00026
      Location:1 → 204
      PTZ00026; 60S ribosomal protein L15; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23515.1

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