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    SCL13 SCARECROW-like 13 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827435, updated on 18-Sep-2024

    Summary

    Official Symbol
    SCL13
    Official Full Name
    SCARECROW-like 13
    Primary source
    TAIR:AT4G17230
    Locus tag
    AT4G17230
    See related
    Araport:AT4G17230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4650C; FCAALL.225; SCARECROW-like 13
    Summary
    Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family.
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    Genomic context

    See SCL13 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (9660593..9663809, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene weak chloroplast movement under blue light protein (DUF827) Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene microtubule-associated proteins 70-5 Neighboring gene structural maintenance of chromosomes protein Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

    Interactions

    General gene information

    NM_001341195.1
    NM_117828.8

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus  

    General protein information

    Preferred Names
    SCARECROW-like 13
    NP_193456.4
    • SCARECROW-like 13 (SCL13); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: scarecrow-like 5 (TAIR:AT1G50600.1); Has 2512 Blast hits to 2467 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2508; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9660593..9663809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117828.8NP_193456.4  SCARECROW-like 13 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193456.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNF6, O23566, Q8W584, Q9M0M5, Q9XE57
      UniProtKB/TrEMBL
      A0A178UVK6, A0A1P8B5A9
      Conserved Domains (1) summary
      pfam03514
      Location:155525
      GRAS; GRAS domain family
    2. NM_001341195.1NP_001328648.1  SCARECROW-like 13 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JNF6, O23566, Q8W584, Q9M0M5, Q9XE57
      UniProtKB/TrEMBL
      A0A178UVK6, A0A1P8B5A9
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