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    calcineurin B subunit-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819175, updated on 18-Sep-2024

    Summary

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    Official Full Name
    calcineurin B subunit-like protein
    Primary source
    TAIR:AT2G45670
    Locus tag
    AT2G45670
    See related
    Araport:AT2G45670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17K2.20
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (18814660..18818545, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 20 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TCP family transcription factor Neighboring gene shrunken seed protein (SSE1)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Acyl-CoA:Lysophosphatidylethanolamine Acyltransferase Activity Regulates Growth of Arabidopsis. Jasieniecka-Gazarkiewicz K, et al. Plant Physiol, 2017 Jun. PMID 28408542, Free PMC Article
    2. Characterization of two Arabidopsis thaliana acyltransferases with preference for lysophosphatidylethanolamine. Stålberg K, et al. BMC Plant Biol, 2009 May 16. PMID 19445718, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_130129.5
    NM_130130.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lysophosphatidylethanolamine acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables lysophospholipid acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables plasmalogen synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in phospholipid metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within very long-chain fatty acid metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    calcineurin B subunit-like protein
    NP_566051.1
    • calcineurin B subunit-related; FUNCTIONS IN: calcium ion binding, acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), Phospholipid/glycerol acyltransferase (InterPro:IPR002123), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Phospholipid/glycerol acyltransferase family protein (TAIR:AT1G80950.1); Has 3507 Blast hits to 3479 proteins in 687 species: Archae - 0; Bacteria - 746; Metazoa - 1091; Fungi - 201; Plants - 987; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).
    NP_566052.1
    • calcineurin B subunit-related; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); Has 326 Blast hits to 325 proteins in 88 species: Archae - 0; Bacteria - 9; Metazoa - 188; Fungi - 2; Plants - 96; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18814660..18818545 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130129.5 → NP_566051.1  calcineurin B subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566051.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64646, Q8GY20, Q8S8S2
      UniProtKB/TrEMBL
      A0A178VT50, A0A5S9X794
      Conserved Domains (3) summary
      cd07991
      Location:148 → 356
      LPLAT_LPCAT1-like; Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like
      COG5126
      Location:392 → 518
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
      cd00051
      Location:462 → 519
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

    2. NM_130130.4 → NP_566052.1  calcineurin B subunit-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566052.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q67Y64
      Conserved Domains (1) summary
      cl17185
      Location:148 → 235
      LPLAT; Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8S2.1

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