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    EDA2 Serine carboxypeptidase S28 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816320, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EDA2
    Official Full Name
    Serine carboxypeptidase S28 family protein
    Primary source
    TAIR:AT2G18080
    Locus tag
    AT2G18080
    See related
    Araport:AT2G18080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    embryo sac development arrest 2; T27K22.5; T27K22_5
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    Genomic context

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    See EDA2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (7857139..7859983)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene vascular related NAC-domain protein 1 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type exopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within megagametogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Serine carboxypeptidase S28 family protein
    NP_179399.5
    • embryo sac development arrest 2 (EDA2); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, megagametogenesis; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Peptidase S28 (InterPro:IPR008758); BEST Arabidopsis thaliana protein match is: Serine carboxypeptidase S28 family protein (TAIR:AT4G36195.3); Has 1319 Blast hits to 1266 proteins in 190 species: Archae - 2; Bacteria - 51; Metazoa - 600; Fungi - 218; Plants - 260; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7857139..7859983
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127364.6 → NP_179399.5  Serine carboxypeptidase S28 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179399.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PF50, Q9SL39
      UniProtKB/TrEMBL
      A0A178VRP0
      Conserved Domains (1) summary
      cl21494
      Location:52 → 430
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PF50.2

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