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    SYP112 syntaxin of plants 112 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816342, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP112
    Official Full Name
    syntaxin of plants 112
    Primary source
    TAIR:AT2G18260
    Locus tag
    AT2G18260
    See related
    Araport:AT2G18260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP112; syntaxin of plants 112; T30D6.23; T30D6_23
    Summary
    member of SYP11 Gene Family
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    Genomic context

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    See SYP112 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (7941778..7943388)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene 4-phosphopantetheine adenylyltransferase Neighboring gene uncharacterized protein Neighboring gene tubby like protein 2 Neighboring gene anaphase promoting complex 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article
    2. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001335591.1
    NM_127384.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables SNAP receptor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within membrane fusion TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 112
    NP_001318245.1
    • syntaxin of plants 112 (SYP112); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, response to cold, cellular membrane fusion; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 111 (TAIR:AT1G08560.1); Has 1733 Blast hits to 1731 proteins in 229 species: Archae - 0; Bacteria - 19; Metazoa - 889; Fungi - 210; Plants - 409; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7941778..7943388
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335591.1 → NP_001318245.1  syntaxin of plants 112 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PF48, Q9ZPV9
      UniProtKB/TrEMBL
      A0A178VPA2, A0A5S9WZA9
      Conserved Domains (2) summary
      pfam00804
      Location:47 → 245
      Syntaxin
      cl22856
      Location:214 → 279
      SNARE; SNARE motif

    2. NM_127384.4 → NP_179418.2  syntaxin of plants 112 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179418.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PF48, Q9ZPV9
      UniProtKB/TrEMBL
      A0A178VPA2, A0A5S9WZA9
      Conserved Domains (2) summary
      pfam00804
      Location:47 → 245
      Syntaxin
      cl22856
      Location:214 → 279
      SNARE; SNARE motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZPV9.2

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