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    Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818893, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR-like) superfamily protein
    Primary source
    TAIR:AT2G42920
    Locus tag
    AT2G42920
    See related
    Araport:AT2G42920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F23E6.4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (17858655..17863466)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene MEI2-like 2 Neighboring gene Plant basic secretory protein (BSP) family protein Neighboring gene Phosphoribosyltransferase family protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene Magnesium transporter CorA-like family protein Neighboring gene F-box/LRR protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_129853.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR-like) superfamily protein
    NP_181820.1
    • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48910.1); Has 37919 Blast hits to 14277 proteins in 266 species: Archae - 0; Bacteria - 16; Metazoa - 156; Fungi - 107; Plants - 36994; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17858655..17863466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337000.1 → NP_001325245.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJG6
      UniProtKB/TrEMBL
      A0A178VRW9, A0A5S9X6H8, A0A7G2EDD0
      Conserved Domains (2) summary
      PLN03077
      Location:42 → 528
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:225 → 252
      PPR; PPR repeat [structural motif]

    2. NM_129853.6 → NP_181820.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181820.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SJG6
      UniProtKB/TrEMBL
      A0A178VRW9, A0A5S9X6H8, A0A7G2EDD0
      Conserved Domains (2) summary
      PLN03077
      Location:42 → 528
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:225 → 252
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SJG6.1

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