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    OPT2 oligopeptide transporter 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837525, updated on 18-Sep-2024

    Summary

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    Official Symbol
    OPT2
    Official Full Name
    oligopeptide transporter 2
    Primary source
    TAIR:AT1G09930
    Locus tag
    AT1G09930
    See related
    Araport:AT1G09930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATOPT2; F21M12.32; F21M12_32; oligopeptide transporter 2
    Summary
    oligopeptide transporter
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    Genomic context

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    See OPT2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (3227490..3230257, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Rhamnogalacturonate lyase family protein Neighboring gene TRAF-type zinc finger-like protein Neighboring gene Phosphoglycerate mutase family protein Neighboring gene Phosphoglycerate mutase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An oligopeptide transporter gene family in Arabidopsis. Koh S, et al. Plant Physiol, 2002 Jan. PMID 11788749, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oligopeptide transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oligopeptide transporter 2
    NP_172464.1
    • oligopeptide transporter 2 (OPT2); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: sperm cell, flower, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 4 (TAIR:AT5G64410.1); Has 1309 Blast hits to 1283 proteins in 148 species: Archae - 0; Bacteria - 69; Metazoa - 0; Fungi - 834; Plants - 392; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3227490..3230257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100867.2 → NP_172464.1  oligopeptide transporter 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172464.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04514, Q1PFX3
      UniProtKB/TrEMBL
      A0A178WKF2, A0A5S9TJV3
      Conserved Domains (1) summary
      pfam03169
      Location:39 → 697
      OPT; OPT oligopeptide transporter protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04514.2

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