TIC55-II translocon at the inner envelope membrane of chloroplasts 55-II [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: TIC55-II
Official Full Name: translocon at the inner envelope membrane of chloroplasts 55-II
Primary source: TAIR:AT2G24820
Locus tag: AT2G24820
See related: Araport:AT2G24820
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AtTic55; F27C12.26; F27C12_26; Tic55; translocon at the inner envelope membrane of chloroplasts 55; translocon at the inner envelope membrane of chloroplasts 55-II
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Genomic context

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See TIC55-II in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 3

Sequence:: Chromosome: 2; NC_003071.7 (10574942..10576938)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Chloroplast Protein Tic55 Involved in Dark-Induced Senescence through AtbHLH/AtWRKY-ANAC003 Controlling Pathway of Arabidopsis thaliana.
Title: Chloroplast Protein Tic55 Involved in Dark-Induced Senescence through AtbHLH/AtWRKY-ANAC003 Controlling Pathway of Arabidopsis thaliana.
The direct involvement of dark-induced Tic55 protein in chlorophyll catabolism and its indirect role in the MYB108-NAC signaling pathway during leaf senescence has been described.
Title: The Direct Involvement of Dark-Induced Tic55 Protein in Chlorophyll Catabolism and Its Indirect Role in the MYB108-NAC Signaling Pathway during Leaf Senescence in Arabidopsis thaliana.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_128041.4

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables chlorophyllide a oxygenase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein targeting to chloroplast	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in chloroplast envelope	HDA more info	PubMed
located_in vacuole	HDA more info	PubMed

General protein information

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Preferred Names: translocon at the inner envelope membrane of chloroplasts 55-II

NP_180055.1

translocon at the inner envelope membrane of chloroplasts 55-II (TIC55-II); FUNCTIONS IN: oxidoreductase activity, 2 iron, 2 sulfur cluster binding, chlorophyllide a oxygenase [overall] activity; INVOLVED IN: protein targeting to chloroplast; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain (TAIR:AT3G44880.1); Has 5409 Blast hits to 5405 proteins in 897 species: Archae - 6; Bacteria - 3841; Metazoa - 59; Fungi - 58; Plants - 409; Viruses - 0; Other Eukaryotes - 1036 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

10574942..10576938

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_128041.4 → NP_180055.1 translocon at the inner envelope membrane of chloroplasts 55-II [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_180055.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q56YA0, Q9SK50

UniProtKB/TrEMBL

A0A5S9X183, A0A654EVU1

Conserved Domains (2) summary

PLN02518
Location:1 → 533

PLN02518; pheophorbide a oxygenase

cd04338
Location:71 → 204

Rieske_RO_Alpha_Tic55; Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to ...