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    RNA-processing, Lsm domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839017, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA-processing, Lsm domain-containing protein
    Primary source
    TAIR:AT1G24050
    Locus tag
    AT1G24050
    See related
    Araport:AT1G24050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23E23.20; T23E23_20
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8506968..8508909)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MLP-like protein 423 Neighboring gene Protein kinase superfamily protein Neighboring gene Acyl-CoA N-acyltransferases (NAT) superfamily protein Neighboring gene uncharacterized protein Neighboring gene Cysteine-rich protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_102252.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNA-processing, Lsm domain-containing protein
    NP_173816.2
    • RNA-processing, Lsm domain; CONTAINS InterPro DOMAIN/s: RNA-processing, Lsm domain (InterPro:IPR019181); BEST Arabidopsis thaliana protein match is: RNA-processing, Lsm domain (TAIR:AT1G70220.1); Has 228 Blast hits to 228 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 90; Fungi - 53; Plants - 56; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8506968..8508909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102252.5 → NP_173816.2  RNA-processing, Lsm domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173816.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WHV7, A0A654EHQ1, Q8L466, Q9LR90
      Conserved Domains (1) summary
      smart00995
      Location:89 → 175
      AD; Anticodon-binding domain
    Nucleotide Protein
    Heading Accession and Version

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