U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AMP-dependent synthetase and ligase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843962, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    AMP-dependent synthetase and ligase family protein
    Primary source
    TAIR:AT1G76290
    Locus tag
    AT1G76290
    See related
    Araport:AT1G76290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F15M4.21; F15M4_21
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (28623398..28625408, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2 Neighboring gene O-fucosyltransferase family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene snRNP core protein SMD3 Neighboring gene CYCLIN B2;4

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help
    NM_106279.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    AMP-dependent synthetase and ligase family protein
    NP_177756.1
    • AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: acyl activating enzyme 1 (TAIR:AT1G20560.1); Has 63645 Blast hits to 61448 proteins in 3348 species: Archae - 1176; Bacteria - 38905; Metazoa - 2898; Fungi - 2339; Plants - 2105; Viruses - 1; Other Eukaryotes - 16221 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28623398..28625408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106279.2 → NP_177756.1  AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177756.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SFW5, Q9SGQ5
      UniProtKB/TrEMBL
      A0A178W8W2, A0A5S9WUU1
      Conserved Domains (2) summary
      cd05915
      Location:13 → 532
      ttLC_FACS_like; Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles
      PRK08162
      Location:2 → 538
      PRK08162; acyl-CoA synthetase; Validated
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SFW5.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools