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    ER lumen protein retaining receptor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838586, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ER lumen protein retaining receptor family protein
    Primary source
    TAIR:AT1G19970
    Locus tag
    AT1G19970
    See related
    Araport:AT1G19970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T20H2.24; T20H2_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (6931012..6932826, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene transcription factor Neighboring gene ncRNA Neighboring gene cytomatrix protein-like protein Neighboring gene nucleolin Neighboring gene TBP-associated factor 11B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101852.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ER retention sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein retention in ER lumen IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    ER lumen protein retaining receptor family protein
    NP_173426.1
    • ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT1G75760.1); Has 893 Blast hits to 892 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 316; Fungi - 180; Plants - 232; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6931012..6932826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332421.1 → NP_001323300.1  ER lumen protein retaining receptor family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWL9, A0A5S9V9T9

    2. NM_101852.4 → NP_173426.1  ER lumen protein retaining receptor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173426.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WN45, A0A5S9V9T9, F4HR00
      Conserved Domains (1) summary
      pfam00810
      Location:72 → 215
      ER_lumen_recept; ER lumen protein retaining receptor
    Nucleotide Protein
    Heading Accession and Version

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