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    SAUR-like auxin-responsive protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843575, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SAUR-like auxin-responsive protein family
    Primary source
    TAIR:AT1G72430
    Locus tag
    AT1G72430
    See related
    Araport:AT1G72430
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SAUR78; SMALL AUXIN UPREGULATED RNA 78; T10D10.10; T10D10_10
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (27264602..27265806, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene NADH:ubiquinone oxidoreductase intermediate-associated protein 30 Neighboring gene CCAAT-binding factor Neighboring gene jasmonate-zim-domain protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_105902.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SAUR-like auxin-responsive protein family
    NP_565042.1
    • SAUR-like auxin-responsive protein family; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT1G17345.1); Has 148 Blast hits to 148 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 148; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27264602..27265806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105902.4 → NP_565042.1  SAUR-like auxin-responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565042.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WT54, Q9C9E1
      UniProtKB/TrEMBL
      A0A178WLB5, A0A5S9WTE3
      Conserved Domains (1) summary
      pfam02519
      Location:10 → 99
      Auxin_inducible; Auxin responsive protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9E1.1

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