U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TIFY7 TIFY domain/Divergent CCT motif family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843407, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TIFY7
    Official Full Name
    TIFY domain/Divergent CCT motif family protein
    Primary source
    TAIR:AT1G70700
    Locus tag
    AT1G70700
    See related
    Araport:AT1G70700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5A18.12; F5A18_12; JASMONATE-ZIM-DOMAIN PROTEIN 9; JAZ9
    Summary
    JAZ9 is a protein presumed to be involved in jasmonate signaling. JAZ9 transcript levels rise in response to a jasmonate stimulus. JAZ9 can interact with the COI1 F-box subunit of an SCF E3 ubiquitin ligase in a yeast-two-hybrid assay only in the presence of jasmonate-isoleucine (JA-ILE) or coronatine. The Jas domain appears to be important for JAZ9-COI1 interactions in the presence of coronatine. Two positive residues (R205 and R206) in the Jas domain shown to be important for coronatine -dependent COI1 binding are not required for binding AtMYC2.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TIFY7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (26654529..26657350)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Caleosin-related family protein Neighboring gene Receptor-like protein kinase-related family protein Neighboring gene glycosyl hydrolase 9B1 Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Proteasomal Degradation of JAZ9 by Salt- and Drought-Induced Ring Finger 1 During Pathogen Infection. Ramu VS, et al. Mol Plant Microbe Interact, 2021 Dec. PMID 34615361
    2. Jasmonic acid perception by COI1 involves inositol polyphosphates in Arabidopsis thaliana. Mosblech A, et al. Plant J, 2011 Mar. PMID 21205029
    3. An Arabidopsis Plasma Membrane Proton ATPase Modulates JA Signaling and Is Exploited by the Pseudomonas syringae Effector Protein AvrB for Stomatal Invasion. Zhou Z, et al. Plant Cell, 2015 Jul. PMID 26198069, Free PMC Article
    4. Transcription factor-dependent nuclear localization of a transcriptional repressor in jasmonate hormone signaling. Withers J, et al. Proc Natl Acad Sci U S A, 2012 Dec 4. PMID 23169619, Free PMC Article
    5. A point-to-point protein-protein interaction assay reveals the signaling interplays among plant hormones and environmental cues. Sun K, et al. Plant Direct, 2020 May. PMID 32490347, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Proteasomal Degradation of JAZ9 by Salt- and Drought-Induced Ring Finger 1 During Pathogen Infection.
      Title: Proteasomal Degradation of JAZ9 by Salt- and Drought-Induced Ring Finger 1 During Pathogen Infection.
    2. MYC3 undergoes pronounced conformational changes when bound to the conserved Jas motif of the JAZ9 repressor
      Title: Structural basis of JAZ repression of MYC transcription factors in jasmonate signalling.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001036187.5
    NM_001334477.1
    NM_105738.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    TIFY domain/Divergent CCT motif family protein
    NP_001031264.4
    • TIFY7; FUNCTIONS IN: protein binding; INVOLVED IN: response to jasmonic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 466 Blast hits to 459 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 466; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_177227.5
    • TIFY7; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana protein match is: jasmonate-zim-domain protein 4 (TAIR:AT1G48500.1); Has 360 Blast hits to 360 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      26654529..26657350
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105738.8 → NP_177227.5  TIFY domain/Divergent CCT motif family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177227.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MSB0, F4I6W0, Q0WLN3, Q2V4D4, Q8W4J8, Q9CAC0
      UniProtKB/TrEMBL
      A0A178WNW2, A0A654EMU6
      Conserved Domains (2) summary
      smart00979
      Location:113 → 148
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:220 → 244
      CCT_2; Divergent CCT motif

    2. NM_001334477.1 → NP_001320988.1  TIFY domain/Divergent CCT motif family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMP7, A0A1P8API7, A0A384KXC3, A0A5S9WT45, A0A654EMU6

    3. NM_001036187.5 → NP_001031264.4  TIFY domain/Divergent CCT motif family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031264.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E3R7
      Conserved Domains (2) summary
      smart00979
      Location:113 → 148
      TIFY; This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs
      pfam09425
      Location:196 → 220
      CCT_2; Divergent CCT motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8W4J8.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.