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    Single-stranded nucleic acid binding R3H protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820246, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Single-stranded nucleic acid binding R3H protein
    Primary source
    TAIR:AT3G10770
    Locus tag
    AT3G10770
    See related
    Araport:AT3G10770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (3372092..3374314, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene FBD domain family Neighboring gene Homeodomain-like superfamily protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene F-box associated ubiquitination effector family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_111914.4
    NM_180225.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Single-stranded nucleic acid binding R3H protein
    NP_566381.1
    • Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT5G05100.1); Has 376 Blast hits to 376 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
    NP_850556.1
    • Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT5G05100.1); Has 381 Blast hits to 381 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3372092..3374314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111914.4 → NP_566381.1  Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566381.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LBM0, Q9SG83
      Conserved Domains (2) summary
      cd02642
      Location:24 → 94
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam12752
      Location:121 → 165
      SUZ; SUZ domain

    2. NM_180225.3 → NP_850556.1  Single-stranded nucleic acid binding R3H protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850556.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XC31, A0A654FB57, F4J4X8
      Conserved Domains (2) summary
      cd02642
      Location:24 → 94
      R3H_encore_like; R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H ...
      pfam12752
      Location:121 → 165
      SUZ; SUZ domain
    Nucleotide Protein
    Heading Accession and Version

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