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    2-oxoglutarate-dependent dioxygenase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820633, updated on 18-Sep-2024

    Summary

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    Official Full Name
    2-oxoglutarate-dependent dioxygenase family protein
    Primary source
    TAIR:AT3G14160
    Locus tag
    AT3G14160
    See related
    Araport:AT3G14160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (4693309..4695604)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate-dependent dioxygenase family protein Neighboring gene Aldolase-type TIM barrel family protein Neighboring gene hypothetical protein (DUF936) Neighboring gene GPI-anchored adhesin-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112272.6

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    2-oxoglutarate-dependent dioxygenase family protein
    NP_566479.5
    • 2-oxoglutarate-dependent dioxygenase family protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate-dependent dioxygenase family protein (TAIR:AT3G14140.1); Has 1267 Blast hits to 1266 proteins in 595 species: Archae - 0; Bacteria - 933; Metazoa - 94; Fungi - 54; Plants - 83; Viruses - 2; Other Eukaryotes - 101 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4693309..4695604
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112272.6 → NP_566479.5  2-oxoglutarate-dependent dioxygenase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566479.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VFK0, Q8H117, Q94K86, Q9LJH2
      UniProtKB/TrEMBL
      A0A384KHZ9
      Conserved Domains (1) summary
      pfam13532
      Location:236 → 453
      2OG-FeII_Oxy_2; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version

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