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    IQD5 IQ-domain 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821783, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IQD5
    Official Full Name
    IQ-domain 5
    Primary source
    TAIR:AT3G22190
    Locus tag
    AT3G22190
    See related
    Araport:AT3G22190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    IQ-domain 5
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    Genomic context

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    See IQD5 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (7830905..7834135, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene far-red elongated hypocotyls 3 Neighboring gene DHHC-type zinc finger family protein Neighboring gene uncharacterized protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene hAT transposon superfamily

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Microtubule-associated protein IQ67 DOMAIN5 regulates morphogenesis of leaf pavement cells in Arabidopsis thaliana. Mitra D, et al. J Exp Bot, 2019 Jan 7. PMID 30407556, Free PMC Article
    2. The Microtubule-Associated Protein IQ67 DOMAIN5 Modulates Microtubule Dynamics and Pavement Cell Shape. Liang H, et al. Plant Physiol, 2018 Aug. PMID 29976837, Free PMC Article
    3. The IQD Family of Calmodulin-Binding Proteins Links Calcium Signaling to Microtubules, Membrane Subdomains, and the Nucleus. Bürstenbinder K, et al. Plant Physiol, 2017 Mar. PMID 28115582, Free PMC Article
    4. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    5. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. links calcium signaling to developmental processes that regulate anisotropic growth in pavement cells
      Title: Microtubule-associated protein IQ67 DOMAIN5 regulates morphogenesis of leaf pavement cells in Arabidopsis thaliana.
    2. IQD5 is a microtubele-associated protein and it regulates microtubules dynamics that affect microtubule organization and subsequent cell shape formation.
      Title: The Microtubule-Associated Protein IQ67 DOMAIN5 Modulates Microtubule Dynamics and Pavement Cell Shape.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203017.2
    NM_001338571.1
    NM_001338572.1
    NM_113116.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anisotropic cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intracellular signal transduction IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in leaf pavement cell development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in microtubule-based process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein localization to cortical microtubule cytoskeleton IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of cellulose biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of microtubule cytoskeleton organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in preprophase band IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in spindle microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    IQ-domain 5
    NP_001189946.1
    • IQ-domain 5 (IQD5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 6 (TAIR:AT2G26180.1).
    NP_001319617.1
    • IQ-domain 5 (IQD5); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 6 (TAIR:AT2G26180.1); Has 890 Blast hits to 885 proteins in 49 species: Archae - 0; Bacteria - 4; Metazoa - 33; Fungi - 8; Plants - 826; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7830905..7834135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203017.2 → NP_001189946.1  IQ-domain 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189946.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VHN2, F4J061, Q9LIE3
      UniProtKB/TrEMBL
      A0A384K8F3, A0A7G2EMK6
      Conserved Domains (1) summary
      smart00015
      Location:86 → 108
      IQ; Calmodulin-binding motif

    2. NM_001338571.1 → NP_001319617.1  IQ-domain 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VHN2, F4J061, Q9LIE3
      UniProtKB/TrEMBL
      A0A384K8F3, A0A7G2EMK6
      Conserved Domains (1) summary
      smart00015
      Location:86 → 108
      IQ; Calmodulin-binding motif

    3. NM_001338572.1 → NP_001325926.1  IQ-domain 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VHN2, F4J061, Q9LIE3
      UniProtKB/TrEMBL
      A0A384K8F3, A0A7G2EMK6
      Conserved Domains (1) summary
      smart00015
      Location:86 → 108
      IQ; Calmodulin-binding motif

    4. NM_113116.4 → NP_188858.4  IQ-domain 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188858.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178VHN2, F4J061, Q9LIE3
      UniProtKB/TrEMBL
      A0A384K8F3, A0A7G2EMK6
      Conserved Domains (1) summary
      smart00015
      Location:86 → 108
      IQ; Calmodulin-binding motif
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4J061.1

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