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    TTF-type zinc finger protein with HAT dimerization domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826611, updated on 18-Sep-2024

    Summary

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    Official Full Name
    TTF-type zinc finger protein with HAT dimerization domain-containing protein
    Primary source
    TAIR:AT4G10200
    Locus tag
    AT4G10200
    See related
    Araport:AT4G10200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T9A4.11
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    5
    Sequence:
    Chromosome: 4; NC_003075.7 (6352957..6355609)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene light-mediated development protein 1 / deetiolated1 (DET1) Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene miscRNA Neighboring gene transmembrane protein, putative (DUF239) Neighboring gene NEP-interacting protein, putative (DUF239)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TTF-type zinc finger protein with HAT dimerization domain-containing protein
    NP_001319892.1
    • TTF-type zinc finger protein with HAT dimerisation domain; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, TTF-type (InterPro:IPR006580); BEST Arabidopsis thaliana protein match is: hAT dimerisation domain-containing protein / transposase-related (TAIR:AT2G16040.1); Has 986 Blast hits to 895 proteins in 48 species: Archae - 0; Bacteria - 2; Metazoa - 584; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      6352957..6355609
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340659.1 → NP_001319892.1  TTF-type zinc finger protein with HAT dimerization domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUF7, Q9SN25

    2. NM_117088.2 → NP_192758.1  TTF-type zinc finger protein with HAT dimerization domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192758.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UUF7, Q9SN25
      Conserved Domains (3) summary
      smart00597
      Location:108 → 193
      ZnF_TTF; zinc finger in transposases and transcription factors
      pfam05699
      Location:630 → 703
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam14291
      Location:152 → 368
      DUF4371; Domain of unknown function (DUF4371)
    Nucleotide Protein
    Heading Accession and Version

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