U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    APS2 Pseudouridine synthase/archaeosine transglycosylase-like family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838580, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    APS2
    Official Full Name
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    Primary source
    TAIR:AT1G19920
    Locus tag
    AT1G19920
    See related
    Araport:AT1G19920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASA1; ATP SULFURYLASE ARABIDOPSIS 1; ATP SULFURYLASE PRECURSOR; F6F9.2; F6F9_2
    Summary
    encodes a chloroplast form of ATP sulfurylase.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See APS2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (6914518..6916823, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene male-gamete-specific histone H3 Neighboring gene glyoxal oxidase-related protein Neighboring gene ATPase, F0/V0 complex, subunit C protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene glycosyl hydrolase 9B5

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cloning of a cDNA encoded by a member of the Arabidopsis thaliana ATP sulfurylase multigene family. Expression studies in yeast and in relation to plant sulfur nutrition. Logan HM, et al. J Biol Chem, 1996 May 24. PMID 8647819
    2. Functional characterization of a gene encoding a fourth ATP sulfurylase isoform from Arabidopsis thaliana. Hatzfeld Y, et al. Gene, 2000 May 2. PMID 10806350
    3. Adenosine-5'-triphosphate-sulfurylase from Arabidopsis thaliana and Escherichia coli are functionally equivalent but structurally and kinetically divergent: nucleotide sequence of two adenosine-5'-triphosphate-sulfurylase cDNAs from Arabidopsis thaliana and analysis of a recombinant enzyme. Murillo M, et al. Arch Biochem Biophys, 1995 Oct 20. PMID 7487067
    4. Mining the soluble chloroplast proteome by affinity chromatography. Bayer RG, et al. Proteomics, 2011 Apr. PMID 21365755, Free PMC Article
    5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_101847.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables sulfate adenylyltransferase (ATP) activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to sulfate starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in hydrogen sulfide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within sulfate assimilation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Pseudouridine synthase/archaeosine transglycosylase-like family protein
    NP_564099.1
    • APS2; FUNCTIONS IN: sulfate adenylyltransferase (ATP) activity; INVOLVED IN: sulfate assimilation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: ATP sulfurylase 1 (TAIR:AT3G22890.1); Has 2101 Blast hits to 2098 proteins in 651 species: Archae - 98; Bacteria - 865; Metazoa - 242; Fungi - 201; Plants - 187; Viruses - 0; Other Eukaryotes - 508 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      6914518..6916823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101847.4 → NP_564099.1  Pseudouridine synthase/archaeosine transglycosylase-like family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564099.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43870, Q8LDB2, Q8RWJ3
      UniProtKB/TrEMBL
      A0A178WAV9, A0A5S9V9Q2, A0A654EDA5
      Conserved Domains (1) summary
      TIGR00339
      Location:67 → 458
      sopT; ATP sulphurylase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q43870.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools