U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ubiquitin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825871, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Ubiquitin-like superfamily protein
    Primary source
    TAIR:AT4G05230
    Locus tag
    AT4G05230
    See related
    Araport:AT4G05230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    C17L7.150; C17L7_150
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (2687003..2687623)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene kinesin 5 Neighboring gene cysteine-rich RLK (RECEPTOR-like protein kinase) 25 Neighboring gene Trimeric LpxA-like enzymes superfamily protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Ubiquitin-like superfamily protein Neighboring gene Ubiquitin-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Ubiquitin-like superfamily protein
    NP_192432.1
    • Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G05260.1); Has 4647 Blast hits to 1657 proteins in 390 species: Archae - 0; Bacteria - 2; Metazoa - 2183; Fungi - 551; Plants - 1389; Viruses - 66; Other Eukaryotes - 456 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      2687003..2687623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116762.1 → NP_192432.1  Ubiquitin-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192432.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UYY3, A0A5S9XPP2, Q9M0X2
      Conserved Domains (3) summary
      cd00196
      Location:130 → 198
      UBQ; Ubiquitin-like proteins
      smart00213
      Location:1 → 69
      UBQ; Ubiquitin homologues
      pfam00240
      Location:7 → 72
      ubiquitin; Ubiquitin family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.