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    COBL11 COBRA-like protein 11 precursor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828819, updated on 18-Sep-2024

    Summary

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    Official Symbol
    COBL11
    Official Full Name
    COBRA-like protein 11 precursor
    Primary source
    TAIR:AT4G27110
    Locus tag
    AT4G27110
    See related
    Araport:AT4G27110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COBRA-like protein 11 precursor; T24A18.60; T24A18_60
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    Genomic context

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    See COBL11 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (13599044..13601586, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L14 Neighboring gene Ypt/Rab-GAP domain of gyp1p superfamily protein Neighboring gene ncRNA Neighboring gene DDRGK domain protein Neighboring gene Translation initiation factor SUI1 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis CDPK-SnRK superfamily of protein kinases. Hrabak EM, et al. Plant Physiol, 2003 Jun. PMID 12805596, Free PMC Article
    2. Arabidopsis COBRA-LIKE 10, a GPI-anchored protein, mediates directional growth of pollen tubes. Li S, et al. Plant J, 2013 May. PMID 23384085
    3. The Arabidopsis GPI-anchored protein COBL11 is necessary for regulating pollen tube integrity. Li H, et al. Cell Rep, 2023 Nov 28. PMID 38007687
    4. The COBRA family of putative GPI-anchored proteins in Arabidopsis. A new fellowship in expansion. Roudier F, et al. Plant Physiol, 2002 Oct. PMID 12376623, Free PMC Article
    5. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The Arabidopsis GPI-anchored protein COBL11 is necessary for regulating pollen tube integrity.
      Title: The Arabidopsis GPI-anchored protein COBL11 is necessary for regulating pollen tube integrity.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_118845.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cellulose microfibril organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in pollen tube guidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endomembrane system IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  
    located_in pollen tube IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in vesicle IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COBRA-like protein 11 precursor
    NP_567766.1
    • COBRA-like protein 11 precursor (COBL11); CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918); BEST Arabidopsis thaliana protein match is: COBRA-like protein 10 precursor (TAIR:AT3G20580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13599044..13601586 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118845.3 → NP_567766.1  COBRA-like protein 11 precursor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567766.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67ZQ4, Q9T045
      UniProtKB/TrEMBL
      A0A178V4R6, A0A5S9XX59, A0A654FT91
      Conserved Domains (1) summary
      pfam04833
      Location:235 → 414
      COBRA; COBRA-like protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T045.2

    Gene LinkOut

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