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    Vacuolar import/degradation, Vid27-related protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829477, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vacuolar import/degradation, Vid27-related protein
    Primary source
    TAIR:AT4G33400
    Locus tag
    AT4G33400
    See related
    Araport:AT4G33400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17M5.160; F17M5_160
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    2
    Sequence:
    Chromosome: 4; NC_003075.7 (16077898..16080721, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene dimethylallyl, adenosine tRNA methylthiotransferase Neighboring gene WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) Neighboring gene SIGNAL PEPTIDE PEPTIDASE-LIKE 1 Neighboring gene Peroxidase superfamily protein Neighboring gene BRI1-associated receptor kinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis. Lee CH, et al. PLoS Genet, 2021 May. PMID 33999950, Free PMC Article
    2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis.
      Title: DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_119494.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Vacuolar import/degradation, Vid27-related protein
    NP_195066.1
    • Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT3G19240.1); Has 271 Blast hits to 271 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 139; Plants - 79; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      16077898..16080721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119494.4 → NP_195066.1  Vacuolar import/degradation, Vid27-related protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195066.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UZ92, A0A5S9XY80, Q9SZB7
      Conserved Domains (1) summary
      COG5167
      Location:175 → 625
      VID27; Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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