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    CPK26 calcium-dependent protein kinase 26 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829980, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CPK26
    Official Full Name
    calcium-dependent protein kinase 26
    Primary source
    TAIR:AT4G38230
    Locus tag
    AT4G38230
    See related
    Araport:AT4G38230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 26; ATCPK26; calcium-dependent protein kinase 26; F20D10.350; F20D10_350
    Summary
    member of Calcium Dependent Protein Kinase
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    Genomic context

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    See CPK26 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (17928677..17931511, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene tubulin-tyrosine ligase Neighboring gene Peptidase M20/M25/M40 family protein Neighboring gene glycerol kinase Neighboring gene alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene ncRNA Neighboring gene transport/golgi organization-like protein (DUF833)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    5. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001204020.2
    NM_001342486.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    calcium-dependent protein kinase 26
    NP_001190949.1
    • calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1).
    NP_001190950.1
    • calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1).
    NP_195536.2
    • calcium-dependent protein kinase 26 (CPK26); FUNCTIONS IN: calmodulin-dependent protein kinase activity, protein kinase activity, kinase activity, calcium ion binding, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Calcium-dependent protein kinase family protein (TAIR:AT2G17290.1); Has 94022 Blast hits to 87051 proteins in 3195 species: Archae - 49; Bacteria - 6802; Metazoa - 37554; Fungi - 14737; Plants - 17453; Viruses - 106; Other Eukaryotes - 17321 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      17928677..17931511 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_119985.2 → NP_195536.2  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195536.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SZM3
      Conserved Domains (3) summary
      PTZ00184
      Location:174 → 316
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:257 → 317
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cl21453
      Location:1 → 137
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001204021.1 → NP_001190950.1  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190950.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q058J0, Q9SZM3
      UniProtKB/TrEMBL
      A0A178V0I0, A0A654FWM9
      Conserved Domains (2) summary
      COG5126
      Location:322 → 460
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
      cd05117
      Location:24 → 281
      STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases

    3. NM_001204020.2 → NP_001190949.1  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190949.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y052, F4JTL3
      Conserved Domains (4) summary
      PTZ00184
      Location:348 → 490
      PTZ00184; calmodulin; Provisional
      cd00051
      Location:431 → 491
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      cd05117
      Location:54 → 311
      STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
      pfam00069
      Location:54 → 312
      Pkinase; Protein kinase domain

    4. NM_001342486.1 → NP_001328909.1  calcium-dependent protein kinase 26 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q058J0, Q9SZM3
      UniProtKB/TrEMBL
      A0A178V0I0, A0A654FWM9
      Conserved Domains (2) summary
      COG5126
      Location:322 → 460
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
      cd05117
      Location:24 → 281
      STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SZM3.1

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