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    RNA polymerase III subunit RPC82 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824061, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase III subunit RPC82 family protein
    Primary source
    TAIR:AT3G49000
    Locus tag
    AT3G49000
    See related
    Araport:AT3G49000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Sequence:
    Chromosome: 3; NC_003074.8 (18162560..18165986)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene AMP-dependent synthetase and ligase family protein Neighboring gene miscRNA Neighboring gene breast basic conserved 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_114759.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase III subunit RPC82 family protein
    NP_566914.1
    • RNA polymerase III subunit RPC82 family protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase III subunit RPC82-related, helix-turn-helix (InterPro:IPR013197), RNA polymerase III Rpc82, C -terminal (InterPro:IPR008806); Has 265 Blast hits to 257 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 106; Fungi - 69; Plants - 57; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18162560..18165986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_114759.4 → NP_566914.1  RNA polymerase III subunit RPC82 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566914.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VHG8, A0A384KQ15, A0A5S9XJ37, A0A7G2EWC9, Q8LPK6
      Conserved Domains (2) summary
      pfam05645
      Location:150 → 364
      RNA_pol_Rpc82; RNA polymerase III subunit RPC82
      pfam08221
      Location:10 → 70
      HTH_9; RNA polymerase III subunit RPC82 helix-turn-helix domain
    Nucleotide Protein
    Heading Accession and Version

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