U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    HR4 homolog of RPW8 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824212, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    HR4
    Official Full Name
    homolog of RPW8 4
    Primary source
    TAIR:AT3G50480
    Locus tag
    AT3G50480
    See related
    Araport:AT3G50480
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    homolog of RPW8 4
    Summary
    Homolog of RPW8
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HR4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18733021..18734420)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene homolog of RPW8 2 Neighboring gene homolog of RPW8 3 Neighboring gene pseudo Neighboring gene SNF1-related protein kinase 2.2

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. HR4 gene is induced in the Arabidopsis-Trichoderma atroviride beneficial interaction. Sáenz-Mata J, et al. Int J Mol Sci, 2012. PMID 22942755, Free PMC Article
    2. Atypical Resistance Protein RPW8/HR Triggers Oligomerization of the NLR Immune Receptor RPP7 and Autoimmunity. Li L, et al. Cell Host Microbe, 2020 Mar 11. PMID 32101702
    3. Oviposition by pierid butterflies triggers defense responses in Arabidopsis. Little D, et al. Plant Physiol, 2007 Feb. PMID 17142483, Free PMC Article
    4. Origin and maintenance of a broad-spectrum disease resistance locus in Arabidopsis. Xiao S, et al. Mol Biol Evol, 2004 Sep. PMID 15155802
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_114908.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to ethylene IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to external biotic stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to salicylic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to symbiotic bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to symbiotic fungus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    homolog of RPW8 4
    NP_566933.1
    • homolog of RPW8 4 (HR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: homolog of RPW8 3 (TAIR:AT3G50470.1); Has 106 Blast hits to 90 proteins in 15 species: Archae - 14; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18733021..18734420
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339471.1 → NP_001325500.1  homolog of RPW8 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LLF3, B6V842

    2. NM_114908.5 → NP_566933.1  homolog of RPW8 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566933.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WNB7, Q570W3, Q9SCS6
      UniProtKB/TrEMBL
      A0A514YL93
      Conserved Domains (1) summary
      pfam05659
      Location:12 → 147
      RPW8; Arabidopsis broad-spectrum mildew resistance protein RPW8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SCS6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.