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    Adaptin ear-binding coat-associated protein 1 NECAP-1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825029, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Adaptin ear-binding coat-associated protein 1 NECAP-1
    Primary source
    TAIR:AT3G58600
    Locus tag
    AT3G58600
    See related
    Araport:AT3G58600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (21668515..21671292, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DNAse I-like superfamily protein Neighboring gene PPR containing protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene ketol-acid reductoisomerase Neighboring gene tetratricopetide-repeat thioredoxin-like 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_115722.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Adaptin ear-binding coat-associated protein 1 NECAP-1
    NP_567071.1
    • Adaptin ear-binding coat-associated protein 1 NECAP-1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: endocytosis; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adaptin ear-binding coat-associated protein 1 NECAP-1 (InterPro:IPR012466); BEST Arabidopsis thaliana protein match is: non-intrinsic ABC protein 4 (TAIR:AT1G03900.1); Has 463 Blast hits to 463 proteins in 142 species: Archae - 0; Bacteria - 2; Metazoa - 232; Fungi - 69; Plants - 94; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      21668515..21671292 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115722.4 → NP_567071.1  Adaptin ear-binding coat-associated protein 1 NECAP-1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567071.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7S2, A0A384KZ18, Q84WV7, Q8LC98
      Conserved Domains (1) summary
      pfam07933
      Location:32 → 192
      DUF1681; Protein of unknown function (DUF1681)
    Nucleotide Protein
    Heading Accession and Version

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