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    ATL4 TOXICOS EN LEVADURA 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825192, updated on 18-Sep-2024

    Summary

    Official Symbol
    ATL4
    Official Full Name
    TOXICOS EN LEVADURA 4
    Primary source
    TAIR:AT3G60220
    Locus tag
    AT3G60220
    See related
    Araport:AT3G60220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TL4; TOXICOS EN LEVADURA 4
    Summary
    Encodes a putative RING-H2 zinc finger protein ATL4 (ATL4).
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    Genomic context

    See ATL4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (22254563..22256177, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene GroES-like family protein Neighboring gene ncRNA Neighboring gene eukaryotic translation initiation factor 4G

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_115885.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    TOXICOS EN LEVADURA 4
    NP_191581.1
    • TOXICOS EN LEVADURA 4 (ATL4); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G72200.1); Has 8923 Blast hits to 8901 proteins in 292 species: Archae - 0; Bacteria - 8; Metazoa - 2301; Fungi - 667; Plants - 4759; Viruses - 54; Other Eukaryotes - 1134 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22254563..22256177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115885.3NP_191581.1  TOXICOS EN LEVADURA 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191581.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q4TU21, Q9LY41, Q9SPV6, Q9ZT40
      UniProtKB/TrEMBL
      A0A178VKV8, A0A5S9XMG1
      Conserved Domains (1) summary
      cd16454
      Location:116159
      RING-H2_PA-TM-RING; RING finger, H2 subclass, found in the PA-TM-RING ubiquitin ligase family