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    nuclease [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825502, updated on 18-Sep-2024

    Summary

    Official Full Name
    nuclease
    Primary source
    TAIR:AT3G63270
    Locus tag
    AT3G63270
    See related
    Araport:AT3G63270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (23375584..23377661, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene homocysteine methyltransferase 2 Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene NIMA-related kinase 4 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

    General gene information

    NM_116192.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin binding PubMed 
    enables protein binding PubMed 
    Component Evidence Code Pubs
    part_of ESC/E(Z) complex PubMed 
    part_of ESC/E(Z) complex PubMed 
    part_of PRC1 complex PubMed 
    located_in nucleus PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    nuclease
    NP_567144.1
    • CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23375584..23377661 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116192.4 → NP_567144.1  nuclease [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567144.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94K49, Q9M1W3
      UniProtKB/TrEMBL
      A0A178V622, A0A5S9XNA7, A0A654FKB6
      Conserved Domains (2) summary
      cl21459
      Location:90 → 136
      HTH; Helix-turn-helix domains
      cl21562
      Location:183 → 348
      DDE_Tnp_4; DDE superfamily endonuclease
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