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    FMN-linked oxidoreductases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825526, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FMN-linked oxidoreductases superfamily protein
    Primary source
    TAIR:AT3G63510
    Locus tag
    AT3G63510
    See related
    Araport:AT3G63510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (23450536..23452794)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L1p/L10e family Neighboring gene ncRNA Neighboring gene fibronectin type III domain protein (DUF1423) Neighboring gene ncRNA Neighboring gene carotenoid cleavage dioxygenase 1 Neighboring gene RING/U-box superfamily protein Neighboring gene thylakoid lumenal protein (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084866.1
    NM_116216.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA dihydrouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA dihydrouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FMN-linked oxidoreductases superfamily protein
    NP_001078335.1
    • FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11664 Blast hits to 11660 proteins in 2553 species: Archae - 58; Bacteria - 8007; Metazoa - 234; Fungi - 152; Plants - 146; Viruses - 0; Other Eukaryotes - 3067 (source: NCBI BLink).
    NP_567149.2
    • FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      23450536..23452794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_116216.2 → NP_567149.2  FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567149.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCW4, A0A5S9XND0, Q8H128
      Conserved Domains (2) summary
      COG0042
      Location:45 → 378
      DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
      PRK11815
      Location:43 → 379
      PRK11815; tRNA-dihydrouridine synthase A; Provisional

    2. NM_001084866.1 → NP_001078335.1  FMN-linked oxidoreductases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078335.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCW4, A0A5S9XND0, A8MRX7
      Conserved Domains (2) summary
      COG0042
      Location:21 → 345
      DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
      cl21457
      Location:31 → 346
      TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
    Nucleotide Protein
    Heading Accession and Version

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