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    F8H glucuronoxylan glucuronosyltransferase, putative [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832358, updated on 18-Sep-2024

    Summary

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    Official Symbol
    F8H
    Official Full Name
    glucuronoxylan glucuronosyltransferase, putative
    Primary source
    TAIR:AT5G22940
    Locus tag
    AT5G22940
    See related
    Araport:AT5G22940
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FRA8 homolog; MRN17.17; MRN17_17
    Summary
    Homolog of FRA8 (AT2G28110), a member of a member of glycosyltransferase family 47; exhibits high sequence similarity to tobacco (Nicotiana plumbaginifolia) pectin glucuronyltransferase.
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    Genomic context

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    See F8H in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (7676662..7679200)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene CHY-type/CTCHY-type/RING-type Zinc finger protein Neighboring gene enabled-like protein (DUF1635) Neighboring gene SNF7 family protein Neighboring gene alpha/beta-Hydrolases superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The F8H glycosyltransferase is a functional paralog of FRA8 involved in glucuronoxylan biosynthesis in Arabidopsis. Lee C, et al. Plant Cell Physiol, 2009 Apr. PMID 19224953
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. F8H and FRA8 are functional paralogs and they function redundantly in glucuronoxylan (GX) biosynthesis during secondary wall formation in the xylem. [F8H]
      Title: The F8H glycosyltransferase is a functional paralog of FRA8 involved in glucuronoxylan biosynthesis in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001343782.1
    NM_122200.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within glucuronoxylan biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    glucuronoxylan glucuronosyltransferase, putative
    NP_197685.2
    • FRA8 homolog (F8H); CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G28110.1); Has 1434 Blast hits to 1412 proteins in 109 species: Archae - 0; Bacteria - 10; Metazoa - 314; Fungi - 4; Plants - 998; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      7676662..7679200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122200.4 → NP_197685.2  glucuronoxylan glucuronosyltransferase, putative [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197685.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NMM8, Q9FFB4
      UniProtKB/TrEMBL
      A0A178UFL3, A0A384KZ19, A0A5S9Y6N7, W8PUZ4
      Conserved Domains (1) summary
      pfam03016
      Location:108 → 405
      Exostosin; Exostosin family

    2. NM_001343782.1 → NP_001330046.1  glucuronoxylan glucuronosyltransferase, putative [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9M3, A0A5S9Y6N7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NMM8.1

    Gene LinkOut

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