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    AIL7 AINTEGUMENTA-like 7 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836677, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AIL7
    Official Full Name
    AINTEGUMENTA-like 7
    Primary source
    TAIR:AT5G65510
    Locus tag
    AT5G65510
    See related
    Araport:AT5G65510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AINTEGUMENTA-like 7; K21L13.1; K21L13_1; PLETHORA 7; PLT7
    Summary
    Encodes one of three PLETHORA transcription factors required to maintain high levels of PIN1 expression at the periphery of the meristem and modulate local auxin production in the central region of the SAM which underlies phyllotactic transitions.
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    Genomic context

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    See AIL7 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (26185593..26189571)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The effect of AINTEGUMENTA-LIKE 7 over-expression on seed fatty acid biosynthesis, storage oil accumulation and the transcriptome in Arabidopsis thaliana. Singer SD, et al. Plant Cell Rep, 2021 Sep. PMID 34215912
    2. Differences in both expression and protein activity contribute to the distinct functions of AINTEGUMENTA compared with AINTEGUMENTA-LIKE 5 and AINTEGUMENTA-LIKE 7. Krizek BA, et al. Plant Mol Biol, 2023 Oct. PMID 37606746, Free PMC Article
    3. PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Du Y, et al. Proc Natl Acad Sci U S A, 2017 Oct 31. PMID 29078398, Free PMC Article
    4. AINTEGUMENTA-LIKE genes have partly overlapping functions with AINTEGUMENTA but make distinct contributions to Arabidopsis thaliana flower development. Krizek BA. J Exp Bot, 2015 Aug. PMID 25956884, Free PMC Article
    5. Local auxin biosynthesis regulation by PLETHORA transcription factors controls phyllotaxis in Arabidopsis. Pinon V, et al. Proc Natl Acad Sci U S A, 2013 Jan 15. PMID 23277580, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Differences in both expression and protein activity contribute to the distinct functions of AINTEGUMENTA compared with AINTEGUMENTA-LIKE 5 and AINTEGUMENTA-LIKE 7.
      Title: Differences in both expression and protein activity contribute to the distinct functions of AINTEGUMENTA compared with AINTEGUMENTA-LIKE 5 and AINTEGUMENTA-LIKE 7.
    2. The effect of AINTEGUMENTA-LIKE 7 over-expression on seed fatty acid biosynthesis, storage oil accumulation and the transcriptome in Arabidopsis thaliana.
      Title: The effect of AINTEGUMENTA-LIKE 7 over-expression on seed fatty acid biosynthesis, storage oil accumulation and the transcriptome in Arabidopsis thaliana.
    3. This study characterized the effects of three PLETHORA (PLT) transcription factors, PLT3, PLT5, and PLT7, during lateral root outgrowth.
      Title: PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    4. AIL genes exhibit unequal genetic redundancy with roles for AIL5, AIL6, and AIL7 only revealed in the absence of ANT function. AIL5, AIL6, and AIL7 act in a dose dependent manners in ant and other mutant backgrounds.
      Title: AINTEGUMENTA-LIKE genes have partly overlapping functions with AINTEGUMENTA but make distinct contributions to Arabidopsis thaliana flower development.
    5. In A. thaliana, three transcriptional regulators implicated in phyllotaxis, PLETHORA3 (PLT3), PLT5, and PLT7, are expressed in incipient lateral root primordia where they are required for primordium development and lateral root emergence.[PLT7]
      Title: Phyllotaxis and rhizotaxis in Arabidopsis are modified by three PLETHORA transcription factors.
    6. PLT proteins are key regulators of PIN1 activity in control of phyllotaxis. PLT3, PLT5, and PLT7 are essential for normal phyllotaxis. [PLT7]
      Title: Arabidopsis PLETHORA transcription factors control phyllotaxis.
    7. ANT, AIL6 and AIL7 are expressed in distinct domains within the vegetative shoot apical meristem. Triple mutant shoot apical meristems exhibit morphological and cell division defects.
      Title: Three Arabidopsis AIL/PLT genes act in combination to regulate shoot apical meristem function.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within callus formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf phyllotactic patterning IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within maintenance of shoot apical meristem identity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within phyllotactic patterning IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AINTEGUMENTA-like 7
    NP_001318882.1
    • AINTEGUMENTA-like 7 (AIL7); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: AINTEGUMENTA-like 6 (TAIR:AT5G10510.2); Has 7565 Blast hits to 5160 proteins in 254 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 7501; Viruses - 2; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26185593..26189571
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345694.1 → NP_001318882.1  AINTEGUMENTA-like 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6J9N8, Q9LSM4
      UniProtKB/TrEMBL
      A0A5S9YHS7, A0A654GEC5
      Conserved Domains (2) summary
      smart00380
      Location:231 → 303
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
      cl00033
      Location:333 → 396
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

    2. NM_125949.7 → NP_201354.5  AINTEGUMENTA-like 7 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201354.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6J9N8, Q9LSM4
      UniProtKB/TrEMBL
      A0A5S9YHS7, A0A654GEC5
      Conserved Domains (2) summary
      smart00380
      Location:231 → 303
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
      cl00033
      Location:333 → 396
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...

    3. NM_001345695.1 → NP_001330267.1  AINTEGUMENTA-like 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UIZ7, A0A1P8BA85

    4. NM_001345696.1 → NP_001330268.1  AINTEGUMENTA-like 7 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BA69, A0A654GEC5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6J9N8.2

    Gene LinkOut

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