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    Plant self-incompatibility protein S1 family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832675, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Plant self-incompatibility protein S1 family
    Primary source
    TAIR:AT5G26060
    Locus tag
    AT5G26060
    See related
    Araport:AT5G26060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1N24.103; T1N24_103
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (9104730..9105525, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ferrochelatase 1 Neighboring gene histone deacetylase 2 Neighboring gene Plant self-incompatibility protein S1 family Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene proline-rich family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_122507.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Plant self-incompatibility protein S1 family
    NP_568481.1
    • Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT5G11820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9104730..9105525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122507.3 → NP_568481.1  Plant self-incompatibility protein S1 family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568481.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MFI1, Q680N1, Q8LD00, Q9XH01
      UniProtKB/TrEMBL
      A0A178UHY6, A0A5S9Y8F9, A0A654G464
      Conserved Domains (1) summary
      pfam05938
      Location:32 → 122
      Self-incomp_S1; Plant self-incompatibility protein S1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q680N1.1

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