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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831549, updated on 18-Sep-2024

    Summary

    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT5G16860
    Locus tag
    AT5G16860
    See related
    Araport:AT5G16860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2K13.10; F2K13_10
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    1
    Sequence:
    Chromosome: 5; NC_003076.8 (5543834..5546537)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene binding partner of acd11 1 Neighboring gene telomerase reverse transcriptase Neighboring gene Peptidyl-tRNA hydrolase II (PTH2) family protein Neighboring gene Target of Myb protein 1

    General gene information

    NM_121692.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables zinc ion binding  
    Process Evidence Code Pubs
    involved_in RNA modification  
    Component Evidence Code Pubs
    located_in mitochondrion  

    General protein information

    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_197188.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5543834..5546537
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121692.2 → NP_197188.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197188.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LFL5
      UniProtKB/TrEMBL
      A0A178UD16, A0A5S9Y5C3
      Conserved Domains (3) summary
      PLN03077
      Location:57 → 846
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:546 → 573
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:293 → 342
      PPR_2; PPR repeat family
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