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    retinal-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831893, updated on 18-Sep-2024

    Summary

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    Official Full Name
    retinal-binding protein
    Primary source
    TAIR:AT5G01010
    Locus tag
    AT5G01010
    See related
    Araport:AT5G01010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    TOPTELOMERE.1; TOPTELOMERE_1
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    17
    Sequence:
    Chromosome: 5; NC_003076.8 (995..5156, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001161215.1
    NM_001161216.1
    NM_001342568.1
    NM_001342569.1
    NM_120177.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    retinal-binding protein
    NP_001154688.1
    • EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 76 Blast hits to 76 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_001318447.1
    • EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 85 Blast hits to 85 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_001318448.1
    • EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038).
    NP_195721.5
    • CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has 172 Blast hits to 172 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      995..5156 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342568.1 → NP_001318447.1  retinal-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K7W6, Q67ZT5, Q680J7

    2. NM_001342569.1 → NP_001318448.1  retinal-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K7W4, Q67ZT5, Q680J7

    3. NM_120177.7 → NP_195721.5  retinal-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195721.5

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDL6, Q67ZT5, Q680J7, Q8GSG8

    4. NM_001161216.1 → NP_001154688.1  retinal-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154688.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z286, Q67ZT5, Q680J7

    5. NM_001161215.1 → NP_001154687.1  retinal-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154687.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K7W6, Q67ZT5, Q680J7
    Nucleotide Protein
    Heading Accession and Version

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