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    arabinogalactan-protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827406, updated on 18-Sep-2024

    Summary

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    Official Full Name
    arabinogalactan-protein family
    Primary source
    TAIR:AT4G16980
    Locus tag
    AT4G16980
    See related
    Araport:AT4G16980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4520C; FCAALL.321
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (9556783..9557939)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene SUPPRESSOR OF, CONSTITUTIVE protein Neighboring gene disease resistance protein (TIR-NBS-LRR class) Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene disease resistance protein (TIR-NBS class) Neighboring gene neurofilament heavy protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_117802.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    arabinogalactan-protein family
    NP_193431.2
    • arabinogalactan-protein family; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 61554 Blast hits to 29210 proteins in 1485 species: Archae - 170; Bacteria - 11775; Metazoa - 21955; Fungi - 6238; Plants - 10828; Viruses - 2421; Other Eukaryotes - 8167 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9556783..9557939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117802.4 → NP_193431.2  arabinogalactan-protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193431.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UXA5, A0A654FQ50, Q9FT76
    Nucleotide Protein
    Heading Accession and Version

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