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    Low temperature and salt responsive protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818475, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Low temperature and salt responsive protein family
    Primary source
    TAIR:AT2G38905
    Locus tag
    AT2G38905
    See related
    Araport:AT2G38905
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (16244061..16244531, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Serine protease inhibitor, potato inhibitor I-type family protein Neighboring gene calcium-dependent protein kinase 20 Neighboring gene SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_129448.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Low temperature and salt responsive protein family
    NP_565897.1
    • Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT3G05880.1); Has 1410 Blast hits to 1410 proteins in 468 species: Archae - 0; Bacteria - 654; Metazoa - 39; Fungi - 295; Plants - 382; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16244061..16244531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129448.3 → NP_565897.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565897.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W1U1, Q941D7
      Conserved Domains (1) summary
      pfam01679
      Location:5 → 53
      Pmp3; Proteolipid membrane potential modulator
    Nucleotide Protein
    Heading Accession and Version

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