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    ribosome biogenesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814693, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ribosome biogenesis protein
    Primary source
    TAIR:AT2G01640
    Locus tag
    AT2G01640
    See related
    Araport:AT2G01640
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T8O11.19; T8O11_19
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (282830..284598)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene ncRNA Neighboring gene plant UBX domain-containing protein 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene plasmodesmata-located protein 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The nucleolar protein SAHY1 is involved in pre-rRNA processing and normal plant growth. Hsu PJ, et al. Plant Physiol, 2021 Apr 2. PMID 33793900, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001202567.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in ribosome biogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosome biogenesis protein
    NP_001189496.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages.
    NP_565270.1
    • unknown protein; Has 51 Blast hits to 51 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      282830..284598
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126225.4 → NP_565270.1  ribosome biogenesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565270.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZL7, A0A5S9WWG4, Q9ZU92
      Conserved Domains (1) summary
      pfam15341
      Location:10 → 121
      SLX9; Ribosome biogenesis protein SLX9

    2. NM_001202567.1 → NP_001189496.1  ribosome biogenesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189496.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VZL7, A0A5S9WWG4, Q9ZU92
      Conserved Domains (1) summary
      pfam15341
      Location:10 → 121
      SLX9; Ribosome biogenesis protein SLX9
    Nucleotide Protein
    Heading Accession and Version

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