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    ATP-dependent caseinolytic (Clp) protease/crotonase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837432, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    Primary source
    TAIR:AT1G09130
    Locus tag
    AT1G09130
    See related
    Araport:AT1G09130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F7G19.1; F7G19_1
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (2939568..2942345, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene respiratory burst oxidase-like protein Neighboring gene 26S proteasome AAA-ATPase subunit RPT5B Neighboring gene tRNA-Glu Neighboring gene SERINE-ARGININE PROTEIN 30 Neighboring gene pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis. Olinares PD, et al. Plant Cell, 2011 Jun. PMID 21712416, Free PMC Article
    2. Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana. Peltier JB, et al. J Biol Chem, 2001 May 11. PMID 11278690
    3. Structures, Functions, and Interactions of ClpT1 and ClpT2 in the Clp Protease System of Arabidopsis Chloroplasts. Kim J, et al. Plant Cell, 2015 May. PMID 25921872, Free PMC Article
    4. Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. Peltier JB, et al. J Biol Chem, 2004 Feb 6. PMID 14593120
    5. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001035931.2
    NM_001198016.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in plastid stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    ATP-dependent caseinolytic (Clp) protease/crotonase family protein
    NP_001031008.1
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: thylakoid, mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001184945.1
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1).
    NP_563836.1
    • ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1); Has 11947 Blast hits to 11945 proteins in 2949 species: Archae - 0; Bacteria - 7353; Metazoa - 146; Fungi - 81; Plants - 1069; Viruses - 3; Other Eukaryotes - 3295 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2939568..2942345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100782.5 → NP_563836.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563836.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04018, Q67XY5, Q680D2, Q8L770
      UniProtKB/TrEMBL
      A0A178W952, A0A5S9TE79, A0A7G2DRE0
      Conserved Domains (1) summary
      cd07017
      Location:121 → 302
      S14_ClpP_2; Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

    2. NM_001198016.1 → NP_001184945.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001184945.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9TE79, A0A654ED95, A0A7G2DRE0, F4HZE0
      Conserved Domains (1) summary
      cd07017
      Location:121 → 302
      S14_ClpP_2; Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

    3. NM_001035931.2 → NP_001031008.1  ATP-dependent caseinolytic (Clp) protease/crotonase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031008.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04018, Q67XY5, Q680D2, Q8L770
      UniProtKB/TrEMBL
      A0A178W952, A0A5S9TE79, A0A7G2DRE0
      Conserved Domains (1) summary
      cd07017
      Location:121 → 302
      S14_ClpP_2; Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L770.1

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